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Visium

Celinus is a spatial and single-cell analysis solution offering direct measurement of gene expression and genetic alterations at single-cell resolution.
It demonstrates intracellular heterogeneity and characterizes cell types, states, and cellular transition dynamics.
The platform includes spatial gene expression (Visium, Visium-Protein, Visium HD), single-cell immune profiling, and single-cell multiome ATAC.

Starting cost
0 +

€15.380+

€4.480+

€8.200+

Preparing

GeoMX

€10.890+

Preparing

Hyperion

€3.200+

Visium

Celinusis a spatial and single-cell analysis solution offering direct measurement ofgene expression and genetic alterations at single-cell resolution.
Itdemonstrates intracellular heterogeneity and characterizes cell types, states,and cellular transition dynamics.
Theplatform includes spatial gene expression(Visium,Visium-Protein,VisiumHD),single-cell immune profiling, and single-cell multiomeATAC.

Visium

  • A spatial and single-cell analysis solution offering direct measurement of
    gene expression and genetic alterations at single-cell resolution.
  • Ensure high-quality spatial transcriptome data from various tissue blocks (FFPE/FF) with
    meticulous sample handling processes.
  • Display 18,000 genes on a single slide.
  • Provides pathological advisory reports for enhanced research insights.

Process

QC Check

1 week

ROI Selection

2 weeks

Analysis

6 weeks

Celinus Only

Free of charge
(Up to QC)

Pathological advisory reports
(Upon request)

Celinus
analysis report

Celinus Expertise in

Sample handling
(FFPE/FF/Fresh tissue)

Right region
for your interest

Spatial insight
for your sample

Celinus Single in

Block > Section > QC
Slide            >            QC

>  H&E Staining  >  ROI Selection  >  Tissue optimization  >  Sequencing or Running

Readout

Spot Quality Measurement

UMI counts

Expressed genes

Mitochondria (%)

UMI counts

Expressed genes

Mitochondria (%)

Number of Reads

Number of expressed genes

Number of expressed genes

Quality measurements of spots

Spatially related function

Function related with
horizonal coordinates

  • Extracellular space
  • Extracellular region part
  • Extracellular region
  • Extracellular exosome
  • Extracellular organelle

Function related with
Perpendicular coordinates

  • Extracellular space
  • Extracellular region part
  • Extracellular region
  • Ribosome, cytoplasmic
  • Eukaryotic translation elongation

Function related with
Center-to-outer coordinates

  • Immune response
  • Immune system process
  • Leukocyte activation
  • Cell activation
  • Lymphocyte activation

Biological functions related to spatial coordinates

Clustering and visualization of UMAP analysis

Cluster DEGs

UMI counts

Clusters from tSNE plot and heatmap of differentially expressed genes for each clusters

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